Managing sclerotinia stem rot of canola in 2022

Take home messages

• Outbreaks of sclerotinia stem rot are sporadic and dependent on the growing season conditions.  Saturated canopy conditions for more than 48 hours during flowering favour the development of the disease
• Current and adjacent paddocks with histories of sclerotinia disease in broadleaf crops over the last four years are an indicator of potential risk for this season’s crop
• The frequency of canola or lupin in a paddock is very important in determining the risk of a sclerotinia outbreak, as these crops are very good hosts for the disease and can quickly build up levels of soil borne sclerotia
• Foliar fungicides for management of the disease are best applied at 20 – 30% bloom (15-20 flowers off the main stem) for main stem protection
• In low to medium rainfall regions outbreaks of sclerotinia stem rot are sporadic and the returns from foliar fungicide applications must be considered carefully.

How does the disease develop?

The complexity of the disease cycle of sclerotinia stem rot results in disease outbreaks being sporadic compared to other diseases. There are several key stages that must be synchronised and completed in order for plant infection to occur.  Weather conditions must be suitable for the pathogen at each stage. These stages of development include:

1. Softening and germination of soil borne sclerotia
2. Apothecia development and release of ascospores
3. Infection of petals by air-borne ascospores
4. Senescence of infected petals in the presence of moisture and subsequent stem infection

Weather conditions during flowering play a major role in determining the development of the disease. The presence of moisture during flowering and petal fall will determine if sclerotinia stem rot develops. Dry conditions during this time can quickly prevent development of the disease, hence even if flower petals are infected, dry conditions during petal fall will prevent stem infection development.

What are the factors that drive the development of sclerotinia stem rot?

• Frequency of sclerotinia outbreaks. The past frequency of sclerotinia stem rot outbreaks in the district can be used as a guide to the likelihood of sclerotinia developing this season. Paddocks with a recent history (last 5 years) of sclerotinia outbreaks are an indicator of potential risk, as well as those paddocks that are adjacent.  The frequency of canola and lupin in the paddock can also increase disease risk.  Canola and lupin are very effective hosts for the disease and can quickly build up levels of soil-borne sclerotia.
• Commencement of flowering. The commencement of flowering can determine the severity of a sclerotinia outbreak.  Spore release, petal infection and stem infection have a better chance of occurring when conditions are wet for extended periods, especially for more than 48 hours.  Canola crops which flower earlier in winter (late June - July) are more prone to disease development and exposure to multiple infection events.
• Spring rainfall.  Epidemics of sclerotinia stem rot occur in districts with reliable late winter and spring rainfall with long flowering periods for canola.  These provide long periods of canopy wetness necessary for the disease to develop, at least 48 hours or more.  Overnight dews generally don’t trigger epidemics of the disease.

Figure 1. Factors that drive the development of sclerotinia stem rot

Pre-sowing sclerotinia management

Crop rotation

• Rotate canola once in every 4 to 5 years to reduce build-up of sclerotia
• Incorporate lower-risk crops into the crop rotation e.g. cereals, field pea and faba bean
• Separate last year’s canola stubble and new seasons’ crops by at least 500m
• Ascospores spread within 100m to 400m of the apothecia

Burning

• Burning of stubbles and windrows will kill some sclerotia, but will not significantly reduce the risk of disease
• Always use seed free of sclerotia where possible
• Grade retained seed for sowing to remove sclerotia if in doubt
• Grain receival standards allow a maximum of 0.5 per cent sclerotes in the sample.
• There are no Australian canola varieties with known resistance to sclerotinia. Some differences may be observed in the level of stem rot in some seasons. This is likely to be related to the timing of flowering and infection events.
• Always follow the recommended sowing time and seeding rate for your region
• Early maturing varieties sown early can be prone to developing stem infection due to the earlier commencement of flowering when conditions are wet for prolonged periods.
• Once flowering starts, the crop becomes susceptible to infection and prolonged exposure to infested senescent petals means greater chance of stem infection
• Bulky crop canopies can retain more moisture and are conducive for the development of stem infections
• Wider row spacing or reduced seeding rates can increase air-flow through the canopy, reducing moisture retention and potential for infection.

Clean seed

• Always use seed free of sclerotia where possible
• Grade retained seed for sowing to remove sclerotia if in doubt
• Grain receival standards allow a maximum of 0.5 per cent sclerotes in the sample.

Variety selection

• There are no Australian canola varieties with known resistance to sclerotinia. Some differences may be observed in the level of stem rot in some seasons. This is likely to be related to the timing of flowering and infection events.

Crop management

• Always follow the recommended sowing time and seeding rate for your region
• Early maturing varieties sown early can be prone to developing stem infection due to the earlier commencement of flowering when conditions are wet for prolonged periods.
• Once flowering starts, the crop becomes susceptible to infection and prolonged exposure to infested senescent petals means greater chance of stem infection
• Bulky crop canopies can retain more moisture and are conducive for the development of stem infections
• Wider row spacing or reduced seeding rates can increase air-flow through the canopy, reducing moisture retention and potential for infection.

Use SclerotiniaCM app (see useful resources) to determine the most appropriate management strategies for your district.

Post sowing sclerotinia management - fungicide application

• Use foliar fungicides to prevent early stem infection via infested petals
• Always use fungicide products that are currently registered in Australia, there are several new products registered for use in 2022
• Timing of foliar fungicide application is more important than choice of fungicide product in reducing potential levels of stem infection
• Foliar fungicide application is most effective before an infection event
• Application of foliar fungicide at 20-30% bloom stage is most effective in reducing main stem infection and most yield loss by protecting early petals from infection and penetration of fungicide product into the crop canopy to protect potential infection sites from falling petals
• Multiple foliar fungicide applications may be essential in high-risk-disease districts with a high yield potential. Applications at both 10 -20% and 50% bloom provide critical early and follow up protection from multiple infection events
• Use high water rates (at least 100 litres per hectare) to achieve adequate coverage and penetration into the canopy
• Foliar fungicides generally have an active life of two to three weeks. The protection provided may wear off during the critical infection period or where crops have an extended flowering period. A single fungicide application too early may not be effective
• Foliar fungicides will have no effect on managing basal infections, as this occurs below the soil surface and beyond the activity of foliar fungicides.
• Determine disease risk as your crop enters the flowering period
• Assess bloom stage, seasonal conditions and weather forecasts to identify the potential risk to your crop
• Identify how many consecutive wet days are forecast as the crop commences flowering and the week ahead, especially consecutive wet days of 48 hours or more
• Monitor crops for disease development and identify the types of infection. Basal and main stem infections cause the most yield loss.

Always

• Determine disease risk as your crop enters the flowering period
• Assess bloom stage, seasonal conditions and weather forecasts to identify the potential risk to your crop
• Identify how many consecutive wet days are forecast as the crop commences flowering and the week ahead, especially consecutive wet days of 48 hours or more
• Monitor crops for disease development and identify the types of infection. Basal and main stem infections cause the most yield loss.

Useful resources

• NSW DPI Winter Crop Variety Sowing Guide (Disease updates, variety resistance, fungicide products).
• SclerotiniaCM App for iPad and android tablets

Acknowledgements

The authors wish to thank NSW DPI and GRDC for investment into this research.

Contact details

Kurt Lindbeck (Senior Pulse and Oilseed Pathologist)
NSW Department of Primary Industries, Wagga Wagga Agricultural Institute
Ph: 02 69 381 608
Email: kurt.lindbeck@dpi.nsw.gov.au

GRDC Project Code: DAN1703-011BLX, UOM1306-001RMX, DPI1807-010BLX,